Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LUAD | rs1059292 | chr11:62623051 | T/C | 2.46E-5 | 504 | 21.73 | 23.03 | 7.7 | KM Plot |
| LUAD | rs10897300 | chr11:62625786 | A/G | 2.46E-5 | 504 | 21.73 | 23.03 | 7.7 | KM Plot |
| LUAD | rs10897301 | chr11:62635603 | A/G | 3.04E-5 | 502 | 21.73 | 21.9 | 7.7 | KM Plot |
| LUAD | rs11025523 | chr11:20378124 | A/G | 2.99E-5 | 505 | 18.7 | 21.73 | 22.33 | KM Plot |
| LUAD | rs111246850 | chr17:45828404 | T/C | 8.97E-7 | 504 | 21.88 | 20.87 | 3.97 | KM Plot |
| LUAD | rs111251485 | chr7:98958230 | G/A | 2.44E-6 | 501 | 21.07 | 25.23 | 9.7 | KM Plot |
| LUAD | rs111311763 | chr2:132248330 | G/GGT | 1.98E-5 | 498 | 21.73 | 24.13 | 11.33 | KM Plot |
| LUAD | rs111834333 | chr17:47411814 | C/T | 2.89E-11 | 503 | 21.82 | 21.7 | 4.55 | KM Plot |
| LUAD | rs111944163 | chr17:45840737 | CT/C | 3.56E-7 | 503 | 21.9 | 20.87 | 3.97 | KM Plot |
| LUAD | rs11231215 | chr11:62548365 | C/T | 1.75E-5 | 498 | 21.73 | 21.77 | 7.7 | KM Plot |
| LUAD | rs11231216 | chr11:62551859 | C/T | 1.75E-5 | 498 | 21.73 | 21.77 | 7.7 | KM Plot |
| LUAD | rs11231217 | chr11:62551872 | G/T | 1.75E-5 | 498 | 21.73 | 21.77 | 7.7 | KM Plot |
| LUAD | rs11231226 | chr11:62576590 | C/G | 2.45E-5 | 504 | 21.93 | 21.03 | 7.7 | KM Plot |
| LUAD | rs11231229 | chr11:62577570 | C/T | 2.45E-5 | 504 | 21.93 | 21.03 | 7.7 | KM Plot |
| LUAD | rs11231230 | chr11:62577734 | G/C | 2.45E-5 | 504 | 21.93 | 21.03 | 7.7 | KM Plot |